PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G225400.2
Common NameB456_007G225400, LOC105804055
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 291aa    MW: 33194.5 Da    PI: 7.5381
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G225400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33e-064265123
                        EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                        y+C+ Cg++F +++ L++H +  H
  Gorai.007G225400.2 42 YVCKVCGRRFYTNEKLVNHFKQiH 65
                        9******************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.32E-54068No hitNo description
Gene3DG3DSA:3.30.160.604.2E-54168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00264265IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.0714270IPR007087Zinc finger, C2H2
PROSITE patternPS0002804465IPR007087Zinc finger, C2H2
CDDcd061679.09E-1459194No hitNo description
Gene3DG3DSA:3.40.50.10000.00192186IPR023214HAD-like domain
PfamPF019361.3E-6114197IPR021139NYN domain, limkain-b1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MVAYANQHSF SYVPKAVREQ RRERKLLNQL ENKGVIKSID PYVCKVCGRR FYTNEKLVNH  60
FKQIHEREHQ KRVNQIESAR GSRRVKLVGK YSMKMEKYKN AAREVLTPKV GYGLADELKR  120
AGFWVGTVSN RPQAADVALR DHMVDVMDKR KAECLMLVSD DSDFVGVLKE AKLRCLKTVV  180
VGDADDGALK RVADAGFSWT EILKGKAKKE AVSVVGKWKD RDILKKLEWT YDPEVERKLY  240
GSEDMFDDES EDLDFDGSDD GNSSDYIHKE DSGAWWELDT ESDPDSSKSQ *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492000.10.0PREDICTED: uncharacterized protein LOC105804055
RefseqXP_012492001.10.0PREDICTED: uncharacterized protein LOC105804055
TrEMBLA0A0D2PDM00.0A0A0D2PDM0_G
TrEMBLA0A0D2QXQ90.0A0A0D2QXQ9_G
STRINGPGSC0003DMT4000026011e-146(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-127C2H2 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]